NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1001783

Scaffold Ga0208157_1001783


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1001783 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9369
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062255Metagenome131N
F072843Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208157_10017832F062255GGAGMATVTLGSVPNTIQDICGTQGIFHIRWNKKDRRQFITDKFGHTVINPNYNKYTIPRTGNFRLGVVKNLKGGKRTTDPNEFLIAYDMSKKEYRNIYYNTIQKIVANKKKYYVKVIDTKNIRFGLVERVNND
Ga0208157_10017833F072843GGAMSANWILVDADFGRYHHTKFKSGGRLYFIKAGRKNVSVYDLALRKNVSIKMSALPSLYFNEEYESKLLRKYPNTFKNLLKTFRVYKQKTAIEKNILDTLKNKSKINYKIN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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