NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1002021

Scaffold Ga0208157_1002021


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1002021 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8654
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051146Metagenome / Metatranscriptome144N
F057329Metagenome / Metatranscriptome136N
F062776Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100202114F062776AGGAGMDKYSNPDVFIVLGGFVAIFLIGALLAEVAVFIAKLLGYEDVADKPNVDFMQRLQDGEVLDPDNMFSNDTTK
Ga0208157_10020213F057329AGGMNAGYDDINELVANVMGLNDWLQDREPVEPVAKDGSWGGMNFTINWFDNTKSRYCIRLNTDGTYDMQIFQYQNYKQLGLAIERSLPRESILMLLSTTYQEITSQSNQVLDSLRFEMSKETQEILKKEI
Ga0208157_10020219F051146GGAGMLKDEFLYWINWLKVRWPNAQLGEYSVKSLYKDFEIYDDDVFGKVLLDYFESGNEFLDWSKIKKLCKEFQTQAFTEKAQTIREQKALEDKQVDPPSSLQSYLKMLGYKTFAEAVFYKTQELYKFGGLRDWQRKLFEPYVGLSYSEANTMGWRYGIGTDVNDKRR
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