NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1003696

Scaffold Ga0208157_1003696


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1003696 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5887
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015849Metagenome / Metatranscriptome251Y
F049926Metagenome / Metatranscriptome146Y
F074769Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100369612F049926AGGAMREPEAGTTLGRCTFCKDYIVEGNSNRAKHATVRSGHWMCGDCVVGMKDIVFEALMDYTDTANKEKEKVVESLKVYGWSVDDTGKLRKL
Ga0208157_10036965F015849AGGAGVTGIIDNSKTEQRQRWTELLHAAWMYHQQQVKEMESPIIGKEITDDQLFHMSISVAIQDAIALIQQMEAYGYFEEMEEAEDVLSKPGPAG
Ga0208157_10036969F074769GAGMGNKADKKRLRELAGEKIYKGDVVISEKDEMLYIPFVQSGNPDEERPWLYKGYYRMPDGAIDMELKRMDGHMELSVKSIENYKEYINEAVGSFISKVYKESPHGAKSISIEQHDEEQHLLHKTILSLEADLNKAKEINEKMKQVISEL
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