NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1005471

Scaffold Ga0208157_1005471


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1005471 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4593
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020815Metagenome222N
F061356Metagenome132Y
F067202Metagenome126Y
F087896Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100547112F020815AGGAMRLYMNKQGDWVGTQAEAKKISASMVDVPTDKPNLLKWLNTFTGAIDDAAKEVMEDKPKTRTVTQKAHAWETIRECAQKASIDDMTVALAVYMDRVQDIADKQKETQQ
Ga0208157_100547114F087896AGGAGMNYKTSQGVELSVDGYTKVTQKKSLGYGWEATLYNNDRLVLTQDATGETLSIPPESTQTLRDIFKSITKEI
Ga0208157_10054714F061356GAGGMNRRTFYIYKGYDQTKTLAIIAPNVGKERYVAEVKHLNAKHGHITIRNCLGGLVSEITEDGNINSFIK
Ga0208157_10054719F067202AGGAGMQYKDIVIAAEDLECHTIDTVAEAIKEHILDLDLATSKTLTGFTWRIDVRMRTDNES
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