NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1009769

Scaffold Ga0208157_1009769


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1009769 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3217
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004336Metagenome443Y
F006818Metagenome364Y
F010572Metagenome302N

Sequences

Protein IDFamilyRBSSequence
Ga0208157_10097691F010572GGAGMSGYAGSPSGYLNPVAVDKIQHPDYDAKAFENGTMRIVQYLYPIIKNSVEMLEALCKETDVQVPTDLKDNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWATEDNAHHSVLNWQNPYGSDGQLQQAPAVTQPQMNPYQQPMGQMNPYGQQMP
Ga0208157_10097692F006818GGAGGMAGPPQMTTLARRTTQHTQTEEQPQREVAPAPNVLTRQPVQQQMMPSAEAMSDDELDLYVTRLKMRHKRLSRKWWGLRRKHGKDECPYCGMNTGGGFCKLHQRDYDEYLSALSTRQNRSFGL
Ga0208157_10097694F004336N/AMRFIRNMLFSTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLMGIGLAFGGVGLYVGYYYDTVVTEYGMAIWGVAWLYNGFLMFVMAVSILLSMIKALVVKAFVSPEVQVGQAATRTAQMMRKGGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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