NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1012814

Scaffold Ga0208157_1012814


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1012814 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2722
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043385Metagenome156Y
F093725Metagenome106Y
F097273Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_10128142F093725N/AMNKVKQHINNAKRFRQENYKPLIEYINWSEITKDYNLKTGDLNYTDYNKLELILDNFVKSNTK
Ga0208157_10128143F097273N/AMIYEHEITFNDHSIQYLTSTTNYLNDEDKEFLEALDVDLSTIKLINTYKL
Ga0208157_10128144F043385N/AMIIRKVAGLWIVQRQHSQQIIFSHKSRMTCYEWIFKSVHYA

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