Scaffold Ga0208157_1022193

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208157_1022193

Scaffold Ga0208157_1022193

Overview

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1022193 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1918
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10221932	F009812	AGGAG	MDEFEIEWIPEDTGAPYEAVDPLIDIPSHTIDKLCKKKFGHTNWARMGQMTPEELVGNPHEFDYENGVIYFENAYMV
Ga0208157_10221933	F000720	AGGAG	VTLSKDNKGVRQEIPNRMMSATFALPIDGRRVVGILDYIASDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLKDLVDTLSQDNMVGQMANYLHKNMEDIIMGKKPDKKQRELSTDPYAMKE
Ga0208157_10221934	F011410	AGGAG	MKDLSIKLEWSTSNLLVWTVLGIGIGLCIVNLVTIYNIYSVIETMWLEIQQVKEVNISLYQFIEEHKGDFK
Ga0208157_10221935	F023621	AGGAG	MSLLEKRMDNILKAMREAKDYEMKSIWNRKLQELFKIRERRAYERLEHKARMVH

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