Scaffold Ga0208157_1073763

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208157_1073763

Scaffold Ga0208157_1073763

Overview

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1073763 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	865
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073577	Metagenome / Metatranscriptome	120	N
F089019	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10737631	F073577	AGGAG	MKVKMFDKEWEVNNPTYKEKRELWKLNTMTFEGDKLNQDKYFELLEKVEEISGLKPRDYVNKDDEKLGMANIDSLLQQIFLSYMGLSDDSKKS
Ga0208157_10737632	F089019	N/A	PTQIESYFDVKKLDVDGTSLADAVITGVSFTFENNVARVGRDSNGDAESYAFGIPSVNITGEISLMYDANFDFGSGGNVLQDFLSGNTATLKLQQGDGTVSTAGEMNIECEIYSTAVNLDPNAEAGAVITIPFKVVQPTSSGAASGTAFKFEYADSTQASGW

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