NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208794_1000402

Scaffold Ga0208794_1000402


Overview

Basic Information
Taxon OID3300025093 Open in IMG/M
Scaffold IDGa0208794_1000402 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29617
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (90.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058199Metagenome / Metatranscriptome135N
F090483Metagenome108N
F099414Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208794_100040214F090483GAGGMDVLKNLENAVIECLVVPNELLPESYQGKRSHRSLKSVVKEAQKRGVLESEHKKLKRLKAEKIAIYRENVENGVEIDWQIDDIKLYKNQMCFAQLMELDLDEE
Ga0208794_100040215F058199GAGGMFKLTLITVEACHDGYYNDTTIAFGKSPKACWAKMKGRNHGQRINRGGHPLGYGGTPVICCQRLEKNGKILKEIWD
Ga0208794_10004027F099414AGGMEMSKIEEAIEDIINAHLSGMDFSDMITTEVRECWDMDDLDRIDDMDDRLETVESWVTDAEDKFSPQNVIDLENSVKNLVEHTNQLQMRIKDLEDRLNDYEEIREMAWQSANKSFFQKLMFWR
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