NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208794_1000585

Scaffold Ga0208794_1000585


Overview

Basic Information
Taxon OID3300025093 Open in IMG/M
Scaffold IDGa0208794_1000585 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22465
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003423Metagenome / Metatranscriptome487Y
F003693Metagenome / Metatranscriptome473Y
F028814Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0208794_100058512F028814GGAVSLLLILKEGGGLQIDTIGNLPIDEDIDLLPESGGGIDIDNQLMLWSDSGHALQYLNVDNLLLVGA
Ga0208794_10005856F003423GGAGGMSEFEAPENGVKQMRETIDRKDESIKKLEAELASFKEKEMDLVFGQIGLSTDKGFGKALKQVYDGPVDAESIAQFAKDEYGYEARGQVQDEPQPEAAPVIQDDARARVAALDTNSTSDVPKDVMDQLGEIIAKGSAQDSIRAKLNIMEDGKK
Ga0208794_10005858F003693AGGMQVKSVLIDVSADASNSTSFQTDGLLLCGIKFPAAMTGTVISFDHSLDNSTWADVKETDGTDVSYTISAGDIIRLDPSGWAFASSGYLRITSDGTEAADRTIEVYLRRS
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