Scaffold Ga0208794_1005546

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208794_1005546

Scaffold Ga0208794_1005546

Overview

Basic Information
Taxon OID	3300025093 Open in IMG/M
Scaffold ID	Ga0208794_1005546 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3737
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Atlantic Ocean: Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051938	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_10055464	F051938	AGG	MADEIIEVAGATPAKAEPTSGKSSKRVSVLDMLKEEISREVTRPEIETNVPERKGVTVRFSPNITNEQLKAWRRNSTNRKTDELDSIKFSCYVIGNTVSGIYFDDELVLDDEGNAITFASPVMMEMTGTDRPLPDAIRAFYGVDPHLENVALKILDFAGYGDDVDAEDPTQG

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