NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208794_1007004

Scaffold Ga0208794_1007004


Overview

Basic Information
Taxon OID3300025093 Open in IMG/M
Scaffold IDGa0208794_1007004 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3110
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED234(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F098268Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208794_10070043F001215AGCAGMVDRPFLRGASLTNALPIVDPVNPVFQNLVQLVRVGDVPSEDGAIVEDIFISSKEAYPDDSGMRAASFGIYAYMPNQAAPSTAVPLQISTFTVGLSGSTFGLIQRIELPKVIAPTPNVGYVDQTRPIELGASEALYLEKGYILAVGQIPAPSGVSISGGMSASGIDIFAQGGFY
Ga0208794_10070044F098268AGAAGMPWKQKFRPEQMLKDFSILFDYNYASMWTRWRRGYELFMYANQALEGINYTFRYAINGQAGSGGTEIPGVCYMYPSTKQDMGMRMTLIRPRDSFNFLDVGISIKSVSLYDVENQVYEVELSSNFGAPICFFTGEVVSDRFNPDGTSKTKYNNYTVVAVGVKGVGPNVPNPAPVQNALYLSATEDTSWVTDIGNGFSTPPGPPAPGDFFSTAMRFGCNCPDYLGREDFNLYRYAAQKSYPFTGTEDLKPGIYDAGTATTSGPREEPTRDMPGFARDFGFIYLKRLLGLPEYNDSSESSYSDPNLLYFQPRFCKHIYAAWWDMKNRFEGYDYLQEVLVQPTDEPLDERYREYFYRNLDKQMEVMRQVDNLNWWSKYSPFKDDLPTHMMYSDMFPTVVKVLNFNTLASGTVP
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