NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1000023

Scaffold Ga0208011_1000023


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1000023 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89168
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (28.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016734Metagenome / Metatranscriptome245Y
F036473Metagenome / Metatranscriptome170Y
F038415Metagenome / Metatranscriptome166Y
F056154Metagenome138Y
F070664Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_100002313F038415N/AMKKVIGCIAKYKKEIGGLLRHAATIAGGVLIAKGTLSTDTFTMILGSTSSIVGTGWSFVNKASHKKEVKAAFATDPVTGDVTRHFNEEKKAWESKPAA
Ga0208011_100002324F070664N/AMNKNETYYALATQQGSSIKLQVIETVRGNVVKTYRYPGTLDGSPVISGDTVSFTVTIGSYRKMIIQNIKTGKKVERQIR
Ga0208011_100002345F036473AGAAGMITSLANLKAILLDKVCEVKFVRRNPKPGRPTTRRMLCTNNAQLLNSVEGRTVLNYDPPRQAPSYNPNQENLIVVWDILMQGYRTINCDSVDLISTLESDETFWTYLNEKISPMSASEKMGFMNT
Ga0208011_100002346F016734N/AMSEKQLKKEYETELNKLDLTDSEREAFDHDAKRSLIDLETYQETDTFSLQGYKLSKVMDDIVLAQYVDLSNDGRSVIRNGIHIPLSQVKRTWRLARVILVGPHCKFTTPGDVVCFPDDKGIKVDNLRVVGYDQSLRDCLFLNEQRFFGICQDLEDDDNKSS
Ga0208011_100002387F056154GGAMTRYDKLCERHITRQVRSFYPRKFELSKEFLEAFKLEYSRLVESGQNRKTLLERIRKALTFHL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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