Basic Information | |
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Taxon OID | 3300025096 Open in IMG/M |
Scaffold ID | Ga0208011_1000047 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 58581 |
Total Scaffold Genes | 62 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (83.87%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -11.499 | Long. (o) | -81.405 | Alt. (m) | Depth (m) | 120 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003975 | Metagenome | 459 | Y |
F009560 | Metagenome / Metatranscriptome | 316 | Y |
F010790 | Metagenome | 299 | N |
F013943 | Metagenome | 267 | Y |
F018015 | Metagenome / Metatranscriptome | 237 | Y |
F057673 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208011_100004722 | F003975 | AGGAG | MIKLKELLKEWNDTSFRDLPKRWSKPVMKGREPDGLTEFERLGGTDVELGKVYTDIDRPPFKVESTIDEKMSDEKRSFLMLRIYGDSWKVNMGKVFSGINKGKPTLIKKGLKEIKILNKKIEEMIEDLI |
Ga0208011_100004735 | F057673 | GGAG | MKKLKEILHESKYLKREFGDKLPTLDSVMKQHQESKEQITEGSLPKFQALKDVSDYDRDWGQTFKDIGRGYPRLDYGPRENDMYDWNSRANYQAATKEYHTHMSKVAKKLNTAIKELDGLYKVWSKIIDKHRKNDGSTW |
Ga0208011_100004738 | F018015 | GAGG | VKKKQVFDMTRKWKTFRLDEKLNEENESLWTWVYKGFLGGFKKAEKKGGGSVSLDEVARGVAFLVKTEFGGNAKNDFVKSLKKYIR |
Ga0208011_100004743 | F009560 | N/A | MPFEENRKSYMDSLYGISTLLKRWHTEIHRKDVSKNYMIKKLTEWIKKLEDLRHEIMMGRDK |
Ga0208011_100004752 | F013943 | GGAG | VNTFEQGLWEIIKEGSYSGGGGTGTTDIGDAWPDGLYTKRGERRYVGPASLTRGMQQIDFPASDNIYGGPDSLNNERRAKRDAGKLYKYLSDPDGNSEVKAEELRDDTPPLSPKQRVYGIHGFHRKQEYTIPPETANFYSTSETLVKPTTPPEGTKSGGIPSTPEPGSKKMGSDSGYRQVNPSGQKVFANNKKLWGKWKDHRIMGKVKGREWKGGKLVDLLPKGVN |
Ga0208011_100004755 | F010790 | N/A | MIKLKKILEEKVDLSDISWNHQKLLKVGSDYIHKSRDGRLWYELEDDIKKSKNRTLMRYFKKYEKARLELQHAGAMLTRAFDLEKR |
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