NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208011_1000269

Scaffold Ga0208011_1000269


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1000269 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21330
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (68.89%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006865Metagenome / Metatranscriptome363Y
F008913Metagenome / Metatranscriptome326Y
F010325Metagenome / Metatranscriptome305Y
F015023Metagenome258Y
F025144Metagenome203Y
F034352Metagenome / Metatranscriptome175Y
F037421Metagenome / Metatranscriptome168Y
F101492Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_10002691F101492N/AMFNSAAELGREFRSEVAPMLKSRGFDVRMTSSKRSYYHDGKLKVSIIKVPTNFPVWKSEYSRWEKTDNADRLLSTINNRIKILISNNNVELDAKGEDNLDVDIDVEF
Ga0208011_100026910F006865AGGMGKFSNRIIKVNDVLYECLGSMSVESTNDKGTEYWKGQWGADSVLRNGNVYYYCRTIINAEFEDI
Ga0208011_100026915F034352GGAMKYKVIKDYPTASGILYKNEVVKEDGNSTLKGHIRVKDNMGRIWFIPKENLRKK
Ga0208011_100026926F025144N/AMNEKIKKVFKSLDPDVQEAVKFLINEIQVKREIKKLEKSEKKP
Ga0208011_100026943F008913N/AMLIFYPQLDNGNILWTCDNCDRTAEVSCADTNAVALVCICDGKVHPECNNDWYYQSLYWNRIPMNKRIEYRKGRSKQYERDTKE
Ga0208011_10002695F015023N/AMIKRENKVVLEKNIKDGVLKFMEHLNNTMDKPDGYEYHLNTRGSKYFKVEMTSHGNHRSVYCFIEKSTGIILKSAGWRAPAKGPRGSVLIVDSYKHSDWSGGWLYKVFGNVYGMIG
Ga0208011_10002697F010325AGGMLRKQLVSDKIDQLQLAVERLKSSLVVPSDPGDTGTPIQVVVNALQQIENQIDAIVNLIELEED
Ga0208011_10002699F037421AGGAGMSNKTEDRTYFRELIRKLKELRISAENGEIIVPNDDEDVLAFDELELPITPDIFHKMTSEEKEALFIWLNKDTMPQA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.