Scaffold Ga0208011

Basic Information
Taxon OID	3300025096 Open in IMG/M
Scaffold ID	Ga0208011_1000269 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025096 Open in IMG/M

Scaffold ID

Ga0208011_1000269 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21330
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (68.89%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

21330

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (68.89%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)	Depth (m)	120
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-11.499

Long. (^o)

-81.405

Alt. (m)

Depth (m)

120

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006865	Metagenome / Metatranscriptome	363	Y
F008913	Metagenome / Metatranscriptome	326	Y
F010325	Metagenome / Metatranscriptome	305	Y
F015023	Metagenome	258	Y
F025144	Metagenome	203	Y
F034352	Metagenome / Metatranscriptome	175	Y
F037421	Metagenome / Metatranscriptome	168	Y
F101492	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10002691	F101492	N/A	MFNSAAELGREFRSEVAPMLKSRGFDVRMTSSKRSYYHDGKLKVSIIKVPTNFPVWKSEYSRWEKTDNADRLLSTINNRIKILISNNNVELDAKGEDNLDVDIDVEF
Ga0208011_100026910	F006865	AGG	MGKFSNRIIKVNDVLYECLGSMSVESTNDKGTEYWKGQWGADSVLRNGNVYYYCRTIINAEFEDI
Ga0208011_100026915	F034352	GGA	MKYKVIKDYPTASGILYKNEVVKEDGNSTLKGHIRVKDNMGRIWFIPKENLRKK
Ga0208011_100026926	F025144	N/A	MNEKIKKVFKSLDPDVQEAVKFLINEIQVKREIKKLEKSEKKP
Ga0208011_100026943	F008913	N/A	MLIFYPQLDNGNILWTCDNCDRTAEVSCADTNAVALVCICDGKVHPECNNDWYYQSLYWNRIPMNKRIEYRKGRSKQYERDTKE
Ga0208011_10002695	F015023	N/A	MIKRENKVVLEKNIKDGVLKFMEHLNNTMDKPDGYEYHLNTRGSKYFKVEMTSHGNHRSVYCFIEKSTGIILKSAGWRAPAKGPRGSVLIVDSYKHSDWSGGWLYKVFGNVYGMIG
Ga0208011_10002697	F010325	AGG	MLRKQLVSDKIDQLQLAVERLKSSLVVPSDPGDTGTPIQVVVNALQQIENQIDAIVNLIELEED
Ga0208011_10002699	F037421	AGGAG	MSNKTEDRTYFRELIRKLKELRISAENGEIIVPNDDEDVLAFDELELPITPDIFHKMTSEEKEALFIWLNKDTMPQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208011_1000269

Overview

Ecosystem & Geography

Associated Families

Sequences