NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1000620

Scaffold Ga0208011_1000620


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1000620 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13248
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F005749Metagenome391Y
F012582Metagenome / Metatranscriptome279Y
F013574Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_100062012F013574GGAGMDITKIIQILSEALDDKDWDVIKELLEDLIYEEENPIQHYEKDNDVDDENLWG
Ga0208011_100062022F012582AGGLGKERRLTELHKKIKHLTHTMLHWAEDNKTKEWTPGVHKGGHYVIPQRNGVDWKSDFKFVTKIDMMLADGLDDKLKKNEMKMCNELYKFYSQTYIKDILRKK
Ga0208011_100062023F003091AGGAGMSLLPRKPITKPGEGKPRQKYVTQELYLEERYQISLGLKGPKRLEGESFEEFQTRRRAENGLLKEYLKGVWVKKED
Ga0208011_100062026F005749AGGAGMKNSWLLLMSFDEHDGSPNEIKTLYHKKSKKEMTKMMNLLQDMNEHLVLSLVQIDPTSTYEDIIRVGDSEMYFMDSKKNWNNGKTLEELEEEAFEEMLMGSVLNGDMGYA
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