NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1048606

Scaffold Ga0208011_1048606


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1048606 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)989
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004618Metagenome430Y
F012781Metagenome277Y
F089024Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208011_10486062F012781GAGGMFGKDKNAILTTTLIVKVRKYKDQQPYFSLYNTPSMANEENARDVVKKLNEVEKYNTRDIKEGWQTEYYAVNMTL
Ga0208011_10486063F089024N/AMKKEKLKEFQLNPHYEVELKPNTKIAVGWYMNKYQAFDKRVGIFGKQGEEHKSRQYVSKSGVKCITFWDTLRNRYTTATNYILNIIGESEVK
Ga0208011_10486064F004618N/ADWAKELVDREIRRRPEGKMLKQLEDVKTKALDTVMESGSSDDLIKALELCTKKIGISWVVDTSNIKQISA
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