Scaffold Ga0208010_1002707

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208010_1002707

Scaffold Ga0208010_1002707

Overview

Basic Information
Taxon OID	3300025097 Open in IMG/M
Scaffold ID	Ga0208010_1002707 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5484
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_10027071	F027156	N/A	MIPKVGQLLRWYDNPLYCADDTELENDVGIVKEVQLEGENFFGNDEYQYVVIIDWCKGPHHSYHDQEEWEESIQTNEIVVVE
Ga0208010_10027074	F084099	GAGG	MKIGDIVTMKQALTPERYGLGLIQKILRSREKSYRLVYHILWPDNTISCQFDNEIVLVGRVE
Ga0208010_10027075	F106167	GGAG	MKIGDIVKLHINPSVDWMHKYLEETFEVIDFPTETGVRVKMVGTDPEWQWIIGKADFKIVKEEDE
Ga0208010_10027076	F090254	AGGAGG	MSIPETNYTAREILEIVDGGEFVAILREKYLVVWDGGSVVTVHDLTDSKKEVDYQVLPMFASRGLLTVHDAIDDYFMELDDYNENEGLTTDPIRVIVETESDDPLEVN

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