Scaffold Ga0208010_1088870

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208010_1088870

Scaffold Ga0208010_1088870

Overview

Basic Information
Taxon OID	3300025097 Open in IMG/M
Scaffold ID	Ga0208010_1088870 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	645
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003103	Metagenome	507	Y
F013468	Metagenome	271	Y
F105855	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_10888701	F105855	GAGG	MAYIGRDITSLSNASLLDDITFSSSAGPYNLTKSTVAFTPISAQALVISIDGVIQ
Ga0208010_10888702	F003103	GGAG	MKIYKLESSNFETFFGGPEPKDSIERDVVTIAQTPTCDAFLYLSKDAQDGLELLDSVPEGFDFTYCQEWGLTIDDDVVDRVITDLRDKAYPSWKDQLDMQYHDKKNGTTIWEDMVQAVKEKYPKR
Ga0208010_10888703	F013468	N/A	NALKQIGLIPKKTKILEGNTNPQLKIELKGVEDEDI

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