NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208434_1058911

Scaffold Ga0208434_1058911


Overview

Basic Information
Taxon OID3300025098 Open in IMG/M
Scaffold IDGa0208434_1058911 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)822
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078919Metagenome116Y
F097119Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208434_10589111F097119AGGAGMQNKLISNRELFRQLLARDILAILEDVNAGTWVDMTYLRNNLHNTTSARHYTNLHTAQGHCFTSFGDRFYRNMQSINDKGYGITIRKDKQTNKLFVFNTKFADNYVEAIADTFEDWRTCYKSNRGYEINIAKDEVLA
Ga0208434_10589112F078919N/AGNYNSYNTVASLSNMLNNMYHTMSDHSSETDTYICEVRHSIEAMCKNNPNIAHSYEERTRTTTISFVGNVDAMYDAYMLERNS
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