NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1000022

Scaffold Ga0208669_1000022


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1000022 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72097
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (28.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045198Metagenome / Metatranscriptome153Y
F045797Metagenome / Metatranscriptome152Y
F067212Metagenome126Y
F068236Metagenome / Metatranscriptome125Y
F091012Metagenome108Y
F106104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208669_100002234F067212N/AMQIHCKVCGKDVTMETEFETRRPYRIINNHKCEVKLARAKARALEMGMIL
Ga0208669_100002239F045797N/AMKIIRTVKEDSCIYMLEEFAGTTISTKWRPYTVGDLPSRFGCIDDGSDKGGLYEWFNYKGYTYVRDER
Ga0208669_100002240F068236AGGAMLETKDRKFTHDQVIEVGGEYLRCKETGQWVSENNVENYEVEMLNIQIQQYYEREQDKHY
Ga0208669_100002248F045198N/AMKLEAEHIEAIASYMADDLEDHLDIVFWDGIARVLDEFNIEYDDIGEISDEDCDAIVNETRLMFAPKNDSL
Ga0208669_100002253F091012N/AMENLWKRLKPAVKTKILAEKDEYPYLVNDVKTQLENNKFWTDLPIGTARQVVNFSHDSVFEITMTDFMWGDLFIKKA
Ga0208669_100002255F106104N/AMTTNEIEKQLKRKAEQQIREHVKVIVDNMAEFAREHTNINRSGLRWYSNRAKPEPRFNGDDERLDPFNHFDWNELAQLMRRNMEETLLETMVEKKTKELLNKMDLFE
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