Basic Information | |
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Taxon OID | 3300025099 Open in IMG/M |
Scaffold ID | Ga0208669_1000053 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 52212 |
Total Scaffold Genes | 75 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (72.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -16.21 | Long. (o) | -76.63 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003196 | Metagenome / Metatranscriptome | 501 | Y |
F003423 | Metagenome / Metatranscriptome | 487 | Y |
F014085 | Metagenome / Metatranscriptome | 266 | Y |
F020902 | Metagenome / Metatranscriptome | 221 | Y |
F023355 | Metagenome / Metatranscriptome | 210 | Y |
F038249 | Metagenome / Metatranscriptome | 166 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208669_100005321 | F023355 | AGAAG | MALPGAYVVNSPKPGEYCDNCMHYSNNYCVKFYKEVAPYGWCAVWEPMNNEV |
Ga0208669_100005329 | F014085 | N/A | MDNLSQMREAALERAGGRCEWAYCNDNKWLELAHIHGIGMGGNKKRKFDMDNVAILCKWHHDVYDGRQQKGSSVAYRALLQGFLKRKYVD |
Ga0208669_100005334 | F038249 | AGGA | MIPSAFRGVLVPAYVKSKTQLVAWALEEFMDSDPITNWEFVRELYCHRFGGILFNLRAEGYEITTLQTKTKGLVSYYCTKVPTRTTIS |
Ga0208669_10000535 | F003423 | GGAGG | MEEFDAPQEHGVKQMRETIGRKDDAIKKLEAELESYKDKEIDNVFGKLGLSTDKGFGKALKQVYDGPVTTDAISQFAKDEYGFEANGTVEATPQSTPEPQVQDDARSRVAALDANSTSEIPLGSNEELVAALKGASVKDSLRAKLNYMDQEQQKK |
Ga0208669_100005362 | F020902 | N/A | MDEFLETEFWDMIYNEYGVSDELDILSENVTEIINIRKGIIILITKDFYNGKES |
Ga0208669_10000537 | F003196 | AGG | MQLQKQVLIDVSAHATNSSGVQCDGLLLSGIEFPAAMTGTAVTFDFSYDGSSWVDVVETDGTEVSYTVSAGNVVRVDPSGWAFAAIGFLRVTSGSTEAADRQINLIFKQS |
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