NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1000053

Scaffold Ga0208669_1000053


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1000053 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52212
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (72.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003196Metagenome / Metatranscriptome501Y
F003423Metagenome / Metatranscriptome487Y
F014085Metagenome / Metatranscriptome266Y
F020902Metagenome / Metatranscriptome221Y
F023355Metagenome / Metatranscriptome210Y
F038249Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0208669_100005321F023355AGAAGMALPGAYVVNSPKPGEYCDNCMHYSNNYCVKFYKEVAPYGWCAVWEPMNNEV
Ga0208669_100005329F014085N/AMDNLSQMREAALERAGGRCEWAYCNDNKWLELAHIHGIGMGGNKKRKFDMDNVAILCKWHHDVYDGRQQKGSSVAYRALLQGFLKRKYVD
Ga0208669_100005334F038249AGGAMIPSAFRGVLVPAYVKSKTQLVAWALEEFMDSDPITNWEFVRELYCHRFGGILFNLRAEGYEITTLQTKTKGLVSYYCTKVPTRTTIS
Ga0208669_10000535F003423GGAGGMEEFDAPQEHGVKQMRETIGRKDDAIKKLEAELESYKDKEIDNVFGKLGLSTDKGFGKALKQVYDGPVTTDAISQFAKDEYGFEANGTVEATPQSTPEPQVQDDARSRVAALDANSTSEIPLGSNEELVAALKGASVKDSLRAKLNYMDQEQQKK
Ga0208669_100005362F020902N/AMDEFLETEFWDMIYNEYGVSDELDILSENVTEIINIRKGIIILITKDFYNGKES
Ga0208669_10000537F003196AGGMQLQKQVLIDVSAHATNSSGVQCDGLLLSGIEFPAAMTGTAVTFDFSYDGSSWVDVVETDGTEVSYTVSAGNVVRVDPSGWAFAAIGFLRVTSGSTEAADRQINLIFKQS
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