NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1000767

Scaffold Ga0208669_1000767


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1000767 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12446
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (17.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025477Metagenome201Y
F041433Metagenome / Metatranscriptome160Y
F052610Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0208669_100076710F025477N/AMQKSVQYNAYQSIKLGENTTEKDLYDLFGDSIGVRDSKGNEIPNYFEKKYGRNGMNNK
Ga0208669_100076715F041433GAGMKKKVGKMTQSEFNKLSKALDYMAKDVMKSKGPEYTQEDKDVLANFKNTAVRLNTTELKVWGAFFDKQISSIYAHLNNVNLKKAETIESRFADIINYCHLGLALFKERIR
Ga0208669_10007679F052610N/AMNTIKFLPNNNILLKINFRSSTCEKLLTKVNYTKDLNKYYTINNNNYAEISTI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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