NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1008348

Scaffold Ga0208669_1008348


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1008348 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2994
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y
F056888Metagenome / Metatranscriptome137N
F074009Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208669_10083484F007003N/AMIHFFTKNIDENKYKDIIQRIIMLNGNDGTNNSGYKAWQNFEENWVLNIIPVTDQEDFKVYYKHLNVETSDGIAWGVTGVKVIYMFVNDIKNPFIIRQNIMPIGHELLHAIYQDAVGTSHITRKYDAPEGREGSRGAAATVIVHDNWYGSKDTIKVWIRWGLIWMPITIPFIPVKKAKELYKI
Ga0208669_10083486F074009N/AMGTKIKGKYAGQCKICGSDWNVGDDIFYQKEPKAICADKECFEEQGGKFTPYKQQGTLTSGTGWGKSPIITKLPDVEISDDVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNMIKE
Ga0208669_10083487F056888N/AMNVSEVLDIKGSAENSKKLVVGDKITIQGFHIKNVDEVGAEVAEISTTEGLRHSFGKTIIGQAKSDYWIDVVAKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN
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