NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1015869

Scaffold Ga0208669_1015869


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1015869 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2003
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001205Metagenome / Metatranscriptome748Y
F038303Metagenome / Metatranscriptome166Y
F102082Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208669_10158692F102082N/AMYELFATFCILVNGVPECTTYSDTEKQVYKDLKTCEERAEHRFYETAGGFMQYNIPFESIVIGCKGGEES
Ga0208669_10158694F001205AGCAGMFKDVIGDWPTHEQFILTSCDSAYFDQYFPRFYKTYSKHWELPIHVHIIDPTQTARYRLDRLPVSYTHCTTDKSILKFTYSYETYYQAQRFILLGHNLLENQSVIVADVDSYALRGPTDDQRKLVSSDMGFTEYNGRLMATFCNFHHSRREQAKQSAVKMQQLIEQTDTIGVDQLVIKETFNSLPYNNFKHEEWIRHFDNRTDIDAEKHNQCLIYHEKGTRGKLKTVETTWTDIEL
Ga0208669_10158695F038303N/AFTVEQQITKSCEQLGITTASRTITALSGTLLRNMNQHDRDEIARQLDSNESADTLS
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