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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025101 Open in IMG/M |
| Scaffold ID | Ga0208159_1000031 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47326 |
| Total Scaffold Genes | 73 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 65 (89.04%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.198 | Long. (o) | -77.499 | Alt. (m) | Depth (m) | 38 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027317 | Metagenome | 195 | Y |
| F037430 | Metagenome | 168 | Y |
| F043886 | Metagenome | 155 | Y |
| F060826 | Metagenome | 132 | N |
| F061781 | Metagenome | 131 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208159_100003135 | F060826 | AGGAG | MANSIMETIKERKPKVFYKPTVFFDVDDTLVMWDEKLTGDTVCVNCDGHLNHMVINKGNLEELKRHGSRGIDVIVWSKGGVHWAHSVVRALKLEKYVAGIMTKPFCYYDDLKNPLGSHRYFNIEETYAKDKE |
| Ga0208159_10000314 | F061781 | AGGAG | VGRKNLILTYNMLDSIDLDTSANSSATFTTTIDQLSINIVWSGSTGTNTGSIVVQGTNKDPDASSFAAADYFDLELSGGTINLTGASGEHIVIFDKTPFRAIRLVYTNSTHAAGTVSAIMSAKTLGA |
| Ga0208159_100003153 | F043886 | N/A | MSKKKQKTPSFKKLQKAWYKILDESGFDDIERSGKNRDQFTIDEYSGILKRPTSVVRAKYNLFIEKYYNIASFLSQNATFLPKIDLKILELHGEGYTTQRISDYLRENFEYPLQKTPRKRKPYSIFFVHTKLKYLKLLILIYAKTDCLRSVKISWQSM |
| Ga0208159_100003154 | F027317 | GGA | MTQDKKSPKRILLPPKKRPISLETSSVIPATELLLHDAKAIIGAELAHYRSKAVRGVTLDPKEARIVQGYLESLVKIQREEREIADAQDLSAMSDVELLRLAKRVLENNNADTIDKNERSNNESE |
| Ga0208159_100003160 | F037430 | AGGAGG | MKYEIDAIRCYQSVMFEKTNETFFASRQINNRKPLELEIIEAINMISIKSERDHILIPLTNVSCVYLKSPMKKEQEEKDIAERAKIPTPNIIKKPKVKRSAY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |