NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1000396

Scaffold Ga0208159_1000396


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1000396 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17769
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (98.15%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025385Metagenome202Y
F035970Metagenome / Metatranscriptome171Y
F055213Metagenome139Y
F081232Metagenome114Y
F090864Metagenome / Metatranscriptome108Y
F095340Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_100039614F095340GGAGMINYGDLVRVTKGQYKTHIGIVLDYRNTGRFYPSTELTIKLPNGATIIKDIDYIEKLGDNND
Ga0208159_100039617F055213GGAGMTKTQRFGRPQVGELYVSSTQGRIHILIGYEFVYKSRVDFYKYYKATLKRLDDGASQRWEVAQHEFYKKYKPLNMETK
Ga0208159_100039637F081232GGAGMIEIGTLVRLKFKSVRYGRYKLVSEKIEHDEDKPVGIVVKRGYSGHKGPLVVKWINGNAEIGHPTGSIGYFDKYNVEVIA
Ga0208159_10003966F035970GGAGMDNNLRIILQTAQELAEEYGKHSWQGDCNDFTQASSSVSQELTNLEVERLWDEYANQELLAGGVTFNFHRKGRDKLITISQTDKNCPPK
Ga0208159_10003967F090864GGAGMIHLVKHDKVGAGYALQESDGRWVVRFFYNFHKHFEFTKHAFRQGYLKDCGAINIGETEWTTT
Ga0208159_10003968F025385AGGAGMSYFTDDNGVIKSFMSQTACKSKTLRTDGQSLWSFDTRIAEHVPDGNGNAATLVYDYTYGGGNYISQTTSNHVRLTKKQVPRQNWMNVNEAQKHGLCPLVESRNDTPRKTR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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