NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1009445

Scaffold Ga0208159_1009445


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1009445 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2696
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003492Metagenome / Metatranscriptome483Y
F024093Metagenome / Metatranscriptome207Y
F031892Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_10094453F031892N/AMKSVKFNTIVGTLDAHAMETMNKKGPEYTTGNEDVLNNFKATADKLGVDPLVVWYAYFDKQCSSIAAHVKDDKLQQAEPMISRFGDIINYAKLGYALFYERHANTKRSNK
Ga0208159_10094455F003492N/AMELLTDDIIKAALEADGFMEEPDAPWLLEYIETEHGGKLDTTSDWCDDKYKLKIYSESTADSYDIYWCTHDERPYVSQDGYYYEDHNEWSDRAVEELTSGSDVWVSPDIWSDMEYDFNYILLDWWPDVYEDKFKDKKDELLDSGEYTENENDG
Ga0208159_10094458F024093N/AMAKIKEIHYAASEIADDIIKEIYKQCDWQVGQFLPDNSEGNEINEAHSYMMRTVARHIANKLDVTTNKYYDE
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