NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1013551

Scaffold Ga0208159_1013551


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1013551 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2119
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F013187Metagenome273Y
F021207Metagenome220Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_10135511F012581GGAGMAKYTLYAKKVYYYRKEITAQDSKSAEKRGADYEADDNAERLFEPSGEEFY
Ga0208159_10135512F013187N/AMPTKAKIKKKPKRNTWVYIYGDEFQEIFEHFGFDFPNPDDRIKLKFVKYETREMQDG
Ga0208159_10135514F105326GGAGGMEQRRNLTPREHWELHQSLWHMLGCDMQLKYRDRTTAVYVDNKAKLKYTYSTKGFIKWFPIPKEDKIXI
Ga0208159_10135515F021207GGAGGMSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMTIFRHNTNGDYVIPTMPNEEGNWKVHKSSATKEEVMELIKGGRVIWNKDVI
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