NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208666_1000268

Scaffold Ga0208666_1000268


Overview

Basic Information
Taxon OID3300025102 Open in IMG/M
Scaffold IDGa0208666_1000268 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26090
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (79.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038464Metagenome166N
F070658Metagenome123N
F075427Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0208666_100026812F075427N/AMCLRIDRLWGQQPGWFLSLERSVQVQLLAEHRLLTETPEQAKKNAQRAKRADFDRRMRQING
Ga0208666_100026813F038464AGGAMDTLTLSPLPDLQIRKPASWTALADLTVSWPTEPEDPTFRARLLRCSAAAIGLVIDDERLPLPSYRTASMDLVAYGESVIEVLIPRGVQLGEIIRGGRTVADWLTTTLPSEQEVSDTADFTGAGVSVI
Ga0208666_100026816F070658AGGMSVDLDIELRSVTRHLKRKHGEMRVLSAGEFVVLLAGAQDVLIQLRTGWPVVTGRSRAGWDVQAIQRPFIGYRVSNGVDYSQWVHRAGEGEDGPLWEQQMIIIRDRILPPIVERLNRTITETEQYSQPVQPPQRSLFLATPQQQTASVFSQVRRLRRLVRRR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.