Scaffold Ga0208666_1032109

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208666_1032109

Scaffold Ga0208666_1032109

Overview

Basic Information
Taxon OID	3300025102 Open in IMG/M
Scaffold ID	Ga0208666_1032109 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1581
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F009812	Metagenome	312	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10321092	F009812	N/A	MMEEFEIDWIPEDTGAPYEAVEQEIPAHTVDKICKSKYGHVNWARLEKMTPSELSRNPCVIDYAEGIVYFKNRTLV
Ga0208666_10321093	F000720	AGGAG	MTLIKENKGVRKEIPNRMLCATFAIPIDGRKVVGTLDYIASETGITPMAFWIKLKPTDSYLDRELRASGKLISRCLQHNESLKDLVDTLSQDNIAGHMANYLHKNMEEIILGKQPDKKQRMLSTDPYGMKE
Ga0208666_10321095	F023621	GAG	MDEIRRKYMTSINKRIDNVMKVMREAKDYECKMIWNKHLQELFEIRKRKAYERLQDQARMVH
Ga0208666_10321097	F003020	N/A	SKFKSVSVSKDTYSKLTELAQNRFEIPVSVQKVIEFLLQKEIKKKNGRSNGKSRG

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