NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208666_1153918

Scaffold Ga0208666_1153918


Overview

Basic Information
Taxon OID3300025102 Open in IMG/M
Scaffold IDGa0208666_1153918 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0208666_11539181F029779N/AKYEELCEALVGIDATERYTHEDILSYVYNLKKIEEKFYDKQK
Ga0208666_11539182F008925AGGAGMTNKSKPTIDAVTLNLINKLKKIDDTINEGAWEYIHLGDIIRFQDAFQEAISHYDLKKEGGIHDYGANQGKYQEFWHSDYVCHTDPKAFDPSKVEEEDDEXI

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