NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208013_1002752

Scaffold Ga0208013_1002752


Overview

Basic Information
Taxon OID3300025103 Open in IMG/M
Scaffold IDGa0208013_1002752 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7043
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F004879Metagenome / Metatranscriptome420Y

Sequences

Protein IDFamilyRBSSequence
Ga0208013_10027526F002330N/AMLKYIKQINEALKIGDKFTIYYAPTFTKDGQEQTTIYEPHQYEVNVRSAIWDEKCKINKTGSLTYFDVEKNSHRTAIQTLQPVRIYINKTMYVWKEGK
Ga0208013_10027529F004879GGAGMAKANELKLYQREHFSTKIEKKLEPEIEREELKIKTTINKILDKGIKSFSKSIGADKVIARLEKAEDEKREASRLAYTFFNNKASSIVSYSKAKEYKFDRDEKNTISVKDCISQLEKWAEKQAEQYAETTEQGKRLAYLRALQTKAKDMVAEASVSDELKSSLDNLFQFVGVSWEQKLPALPKPKK
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