NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208013_1005566

Scaffold Ga0208013_1005566


Overview

Basic Information
Taxon OID3300025103 Open in IMG/M
Scaffold IDGa0208013_1005566 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4449
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041813Metagenome159N
F079938Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208013_10055663F079938GAGMTDDLRRVLTRLVAAGHLVTTELDTLELLAYGASSANEAKVAGGDVVDLHTVGDQRARTALAVIERHVGPLLEGFDNALALVHTGGADGPAPRTRKQISRKEHGDALDAQNRRRERGEYTPTRIHPQPRIH
Ga0208013_10055666F041813GGAMNRFTVVHTAELAQHTDDLSWQARGLFLELLLAADYSTGMVPAISREQVRVWTGRSWSATANHLDELGKAGLIVESAAGIEVTVYPQISDPRGNREALRAHREQLALTAKSLAPTAKPTSENAPTITNTRTTVDGHRYIPGEGWV
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