NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208013_1024481

Scaffold Ga0208013_1024481


Overview

Basic Information
Taxon OID3300025103 Open in IMG/M
Scaffold IDGa0208013_1024481 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1764
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049037Metagenome / Metatranscriptome147N
F049924Metagenome / Metatranscriptome146N
F060975Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208013_10244812F049924GAGMRKYATQRLIAKDVPVKLKGLFEGQNLRFRGRGSRKRAVDIVMHSKKLRDKYGTNGLLARFNQDLPLEFADRMSVYSR
Ga0208013_10244813F049037GGAGMSESPCDTCHNYWLCMEGSRACPDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLKVYPLIEDPLGFYFLRHIDGTIENTYTGKSSKRLRNAQAACRQVVLEAKIRESTTRTQDHLGGVVQREMGRNVAALRSDEDQGEN
Ga0208013_10244814F060975AGGAGMGKTIRRNPVAKNMERFNTPKTIRDRKKDFYRPDSKREFEEAIEDMSFDEDNRKDAIITQYQDDLARSQEDGWPYED
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