Scaffold Ga0208793_1002751

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208793_1002751

Scaffold Ga0208793_1002751

Overview

Basic Information
Taxon OID	3300025108 Open in IMG/M
Scaffold ID	Ga0208793_1002751 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9005
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (95.24%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F060926	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208793_100275113	F009527	GGAGG	LKRNAFPPSIVNLLLKEGQRWKVDGKMREALGTGIIPIVASARGGKTSLAYVMIDYVIKHTSRPVILDSFPQKVINEGIPEHWQGRVSNQKFSDLALINEPAVWLLDDNAVHYNSRDSMTNSSKLLARAAGVLSHFGGGMTVIFTTQLLSGIDLSFLRFTTLAPVIRYIDADVINQERKEWRGIVEQGQFELRKICQDYRYRDYFYCSKDSILCPAPFPDFLNKELDPVRADYLSRPMRYHEEKDRVAMITGEVKRAKKGRPKKVDEENKKSVMLGFEDAI
Ga0208793_100275120	F060926	AGG	MATWQTQAKNVAMTIAVLSGIVMALTIGIGEAASVVLDPNDPTDPLDANTTAVFGGTPDLVDRIAVLGVFVLILGSAGLGIIGPTGNPPFINNLVRWMPIVVGLIAFTAFSTEVFDIIQGDRDWSTYSDGQNSYMLFLASSFVAGLLSLFRR

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