NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208793_1040607

Scaffold Ga0208793_1040607


Overview

Basic Information
Taxon OID3300025108 Open in IMG/M
Scaffold IDGa0208793_1040607 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1485
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004336Metagenome443Y
F006818Metagenome364Y
F010572Metagenome302N
F074026Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208793_10406071F010572GGAGMSGYAGSPSGYLNPVAVDKIQHPDYDAKAAENTTMRLIQYLYPVLKNCSEMLEGLCNETEVQVPTDLKDNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWATEDNSHHSVLN
Ga0208793_10406072F006818AGGAGMAGPPQMTTLARTNSQQAQVEEPTREVAPAPNVLTRQPVQQQMMPSAEAMSDDELDLYVTRLKMRHKRLSRKWWGLRRKHGKDACPYCGMTTGGGFCKLHQRDYDEYLSALSTRQNRSFG
Ga0208793_10406074F004336GAGMKFIRNMLFGTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLLGIGFAFGGVGLYVGYYYDSIVTEYGMAIWGVAWLYNGFLMFVLAISLILSAIKALVVKAFISPEVQVGQAATRTAQMMRKGGL
Ga0208793_10406075F074026N/AKWIPMPDGAEPIGYEVAYQLSREFKRDMYEKMDSQKNAYVDVVRP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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