Scaffold Ga0208158_1000181

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208158_1000181

Scaffold Ga0208158_1000181

Overview

Basic Information
Taxon OID	3300025110 Open in IMG/M
Scaffold ID	Ga0208158_1000181 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26881
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (13.64%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.401	Alt. (m)		Depth (m)	75
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011351	Metagenome	292	Y
F051553	Metagenome	144	N
F077934	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208158_100018110	F077934	N/A	MDSKWGWYNIIYGLCGDNILNIDKVTRRPILEVLTFLAYRQDNNNTKSNNYARDSE
Ga0208158_100018114	F051553	N/A	MSQFPNKATQFSSKNQPEKKGRPKGSRNVATVLKELLSTQDKNIGGEGHFGSPVAKMLIKIAFSQESNNNEKLRAIKEILDRIEGLPDQNVNVSATPPSWINTDEDETGETIL
Ga0208158_10001815	F011351	GGA	MELKEYIQQGSKAIILSIEHIQLVEYKNKELDFVYGMEEYHTNIKRMLNQLNRIIWR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.