Scaffold Ga0208158_1003164

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208158_1003164

Scaffold Ga0208158_1003164

Overview

Basic Information
Taxon OID	3300025110 Open in IMG/M
Scaffold ID	Ga0208158_1003164 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4948
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.401	Alt. (m)		Depth (m)	75
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F025154	Metagenome	203	Y
F043454	Metagenome	156	Y
F068825	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208158_100316410	F068825	N/A	MNTIKFLKPDTTTGKQKIQLNGLTYKPYTICELASTKFGEVDEDGFSHITTWFNYKGFTYVAV
Ga0208158_100316411	F025154	AGG	MLQYNMSPWDMVAALGIYTEEQIEEMTWAECVEILNQEE
Ga0208158_10031643	F043454	N/A	MKNKLTGKSIQHYYDSVLSGLITMDEFFELSMILPTTNLYTRNSQILNIL
Ga0208158_10031647	F000126	N/A	MSKRNFSITRKEGEMYDVRVVDSYGKVYQNYFECASDANDWVYYIWEKEEWFNSVNSQELLANAIENCKKLDKKLNIREI

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