NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1000187

Scaffold Ga0209349_1000187


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1000187 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34192
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (87.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013821Metagenome268Y
F089039Metagenome109Y
F093981Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_100018723F089039AGGAGGMAKNGKGFPGPMTPAQMGAYRGIQKAETDPGGLDIRAGNEMGFRSKDWRVKSGADKPDTFGMKIRKG
Ga0209349_100018724F013821AGGMATTQEERQAAIRAVTSTTGTHNEDWLALFTTRSAPAGEYNERMLSYINTLLSASYTNINDAMQALAANQSADNFSSMGTFTP
Ga0209349_100018725F093981N/AVSTNQELRQKTCRDSAGTSYNVNGDWLAIASDAGFSTGTFNERLLNYYNATLGATWGVAAWDEVAWDGTDGNHTNINEAAAAFGESNGIAGPGSLFSQLGSF
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