NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1000894

Scaffold Ga0209349_1000894


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1000894 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15001
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (89.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002310Metagenome / Metatranscriptome572Y
F013821Metagenome268Y
F067111Metagenome126Y
F089039Metagenome109Y
F093981Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10008942F067111GGAMEIKYLIKLIETLGVPLAVALCAGIALWKLIAFLLKDLKTDIAHQQDDLMRALSNNQTMIIKLIDRVRTLEINQMTAYTSLLTAANADLPDWRRTRAERIAELKEQIKDISHNGEETP
Ga0209349_100089433F093981GGAMTTNSEARQASCRVTSGTALNVNGDWLAMCDAMGITTGTINERMMKFCNATLGATWDMASWDEVAWDGADGNLTNINEAMAKFAESNGVTGNGGMFSSMGSF
Ga0209349_100089434F013821GGAGMATNQEARQAAIRAVTSTTGTHNEDWLALFTARSAPAGEYNERLLSYINTKLSTSYTNINDAMQALAANQSADNFSSMGTFTP
Ga0209349_100089435F089039AGGAGMAKGFPNKMTRGQMGAYKGIQEAEYFRGGLNIQAGNELGFRSKGWRVKKGADKPGTFGMKLRRS
Ga0209349_100089437F002310GGAGMNEIMVNADGTVTVVYEGSVSAILDDLVKANTTPAVYNADGSVKTEAIVPDADTLAQQITETDLKTHAWRLPKARADKLEVIRRDRNKKLADLDIEYQLADEGVHPDGLSKTQVAASKQALRDLPPTAESHLDGLNNTDDIEAYDPLAP
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