NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1003402

Scaffold Ga0209349_1003402


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1003402 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7243
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F034394Metagenome175Y
F042629Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209349_10034024F042629GGAGMTITTYDAVDDIISLIKTKWSNLRPPHITKVWEKRTVGFIDDRSDEIMVAPKGENIVYFGLGGSSFWHEQILELDIRTYQDLKRHNKVVKEIVKIIKDNVVGTTYTDLRIIGSFSRNFQFRNMYSYILNISYRKADPS
Ga0209349_10034026F034394N/AMVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIVRKEEELDRRIGHTWKTKKVTREIHDLPLLYTFGWGTPLFLQHRNILELDVDEGDKIEIWKGESNEWENIIDSPQWYHAEYEYGRIYIRGFLFTILRKNRVRVTYRYGGENYAGDTDIPPDITDAVIKMTAIDIMNTSFRMDEIPSGGSVSPTESKRFWQEDIELCISNRREVFVIP
Ga0209349_10034028F016619N/AMAITIAQNSDHKSLTGKTLSVQSQLTSKLKECIVDVTYGGSDNYATNGNTVDLSLGGRISTVIGAEILHSSAGLLLQYAPAASGAAATGKIKAYGHTPTSSTATVVALEELDNADTAVNSLTIRIRVIGF
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