NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209349_1106424

Scaffold Ga0209349_1106424


Overview

Basic Information
Taxon OID3300025112 Open in IMG/M
Scaffold IDGa0209349_1106424 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F032307Metagenome / Metatranscriptome180N
F036732Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0209349_11064241F032307AGGLVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLAVGVLIQAYFTATIQGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGY
Ga0209349_11064242F000730N/AMQMEYTNIQKIGCLCLVNELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEMKSQGVSDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0209349_11064243F036732N/ANTRQEGYVTPAPYLKTAVMKRFTPAGIALHLHADLSHADGVYKYTKNRVSMLGQ
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