Scaffold Ga0208433_1034764

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208433_1034764

Scaffold Ga0208433_1034764

Overview

Basic Information
Taxon OID	3300025114 Open in IMG/M
Scaffold ID	Ga0208433_1034764 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1383
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → Candidatus Scalindua rubra	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	135
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031264	Metagenome	183	N
F096030	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208433_10347641	F096030	N/A	MLRPSLASLSLSVSDTSTKKPIVIHHHNNLTMGGTEKMCQIFLKHFVKDTTFDHYVAYKAIGDNTREPYFKEIVGSERMICYESPAKLLSTIHGLKPFILHRYSAGIPEYPFVNEIKQHTKHFVSTSVFGNQDDTIDISKVIYVSKHVQWMADKQGAKNHHVVRNPIEAPYSTENLREELGIPADAFVFGRIGRDDESIYDPI
Ga0208433_10347642	F031264	N/A	LDYGKKVWITTVFNGDQNECASGCGENTFIYLPENTGYGYGALDSFNSGLEFARSGYRPYVAIFNFDVWFLTEAGFVTAMSEFVESGKGFAAGYHQTHHWAMTDCMFFRRDFLQKLLPIQDRVLASRKENKWLKNEMSGTELGFENMEEWTMYSLNQAVSDGEVREIRENKTNDDLMNNVDPNIKAEWFQLERDGHPRYRYTDKYKLIHEHDDDLKKQLLTHHNIKKGHNICKYLGVNIKHNVLNDVRQADGSTMAI

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