Basic Information | |
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Taxon OID | 3300025114 Open in IMG/M |
Scaffold ID | Ga0208433_1034764 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1383 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → Candidatus Scalindua rubra | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 135 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F031264 | Metagenome | 183 | N |
F096030 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208433_10347641 | F096030 | N/A | MLRPSLASLSLSVSDTSTKKPIVIHHHNNLTMGGTEKMCQIFLKHFVKDTTFDHYVAYKAIGDNTREPYFKEIVGSERMICYESPAKLLSTIHGLKPFILHRYSAGIPEYPFVNEIKQHTKHFVSTSVFGNQDDTIDISKVIYVSKHVQWMADKQGAKNHHVVRNPIEAPYSTENLREELGIPADAFVFGRIGRDDESIYDPI |
Ga0208433_10347642 | F031264 | N/A | LDYGKKVWITTVFNGDQNECASGCGENTFIYLPENTGYGYGALDSFNSGLEFARSGYRPYVAIFNFDVWFLTEAGFVTAMSEFVESGKGFAAGYHQTHHWAMTDCMFFRRDFLQKLLPIQDRVLASRKENKWLKNEMSGTELGFENMEEWTMYSLNQAVSDGEVREIRENKTNDDLMNNVDPNIKAEWFQLERDGHPRYRYTDKYKLIHEHDDDLKKQLLTHHNIKKGHNICKYLGVNIKHNVLNDVRQADGSTMAI |
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