Scaffold Ga0208433_1036894

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208433_1036894

Scaffold Ga0208433_1036894

Overview

Basic Information
Taxon OID	3300025114 Open in IMG/M
Scaffold ID	Ga0208433_1036894 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1337
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	135
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040677	Metagenome	161	Y
F054926	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208433_10368941	F054926	N/A	LTKAEAEQFALMVLSGAPVGHAVNYFWEEEVSDAMLEACAQAWPMQAEVLVAMRVLCGGESWHQMSDPARLEVALKKHYNELAYFLWTTNYADCEGGEKLKADTCRQAIETKVAGMAGRESPLAHFYQDVLARFESQGKTN
Ga0208433_10368942	F040677	AGGA	MPVASVPVVLRDRLMTEFRAYLCKNANFIPFEHQAAWWATTDGYTLTGIEAQPGDPGVAVRLPDGSTVSRLLKPRPQGRARVVAELGAYKSGKSAGAGIWAAAFAAVPNARVYLVGNEYDMCVPEFEYLLEALCSERGLNQSYRSLQNRPKDGRLWLELENGARFEARSWERSESLKGKEVDAYIYCEAYQLPGIECFTSVAQNLRSRQGYAVFPTTPDRPWVQVFHDHGHDHEAFPSWACHCGIHANVNPYAFDQAAMDRDEQLLTREKFSIAYLGKLGEFVGRVFHYQRGDRVIPLNDEPR

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