NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208790_1018337

Scaffold Ga0208790_1018337


Overview

Basic Information
Taxon OID3300025118 Open in IMG/M
Scaffold IDGa0208790_1018337 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2422
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004336Metagenome443Y
F006818Metagenome364Y
F010572Metagenome302N

Sequences

Protein IDFamilyRBSSequence
Ga0208790_10183371F010572N/AMEKTMSGYAGSPSGYLNPVAVDKIQHPDYDAKASENITMRVVQYLYPVIKNSVEMLETLCKETDVQVPTDLADNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWATEDNAHHSVLNWQNPYGNDGTLQQAPAVTQQQMNPYQMQQQG
Ga0208790_10183372F006818AGGGGGMAGPPQMTTLARKRSLDQQADEPQREVAPAPNVLTRAPVSQAMMPSAETMSDEELDLYVKRLTMRHKRLSQKWWGLRRKHGKDECPYCGMNTGGGFCKIHQRDYDEYLGALSTRQNRSFG
Ga0208790_10183374F004336N/AMKFIRNMLFSTGRYPSTMGAGGQQDVDFCRYIEWMWFKRCIWLLGMGFGLGGVGLYVGYFYEEVVLDYGMAIWGVAWLYNGFLLFVMAVSIVLSMLKALVVKAFVSPEVQVGQAATRTAQMMRKGGI

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