NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000105

Scaffold Ga0209535_1000105


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000105 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51096
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (18.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004850Metagenome / Metatranscriptome421Y
F005351Metagenome / Metatranscriptome403Y
F033810Metagenome / Metatranscriptome176N
F051932Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100010510F004850N/AMNYEFEIYYGEIEEPLYLTNDKNYICEEMYDFMQDELGIVMNEVIYKVEAI
Ga0209535_100010511F005351N/AMYNPNSPSNWSWSKAFKEMEKTINKAELEQQIVNHQHNYDGGVKKFTELSKNKQNNHYEILSQIL
Ga0209535_10001052F051932N/AMFDLTDQDYDTLTKLRWLQLNELAIKYTNDQELGAEVRKLIKK
Ga0209535_10001055F033810GAGMSSKQIHWNPDTIDHFIFISNYADVDQVLTQVENFVSIDCELQGDDTEKDLVKDLMNKIYERRYE
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