NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000199

Scaffold Ga0209535_1000199


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000199 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40453
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (67.61%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F000681Metagenome / Metatranscriptome939Y
F000724Metagenome / Metatranscriptome919Y
F000896Metagenome / Metatranscriptome845Y
F003326Metagenome / Metatranscriptome494Y
F003357Metagenome / Metatranscriptome492N
F004235Metagenome / Metatranscriptome447Y
F008154Metagenome338Y
F009991Metagenome / Metatranscriptome310Y
F025595Metagenome / Metatranscriptome201N
F041446Metagenome160Y
F041486Metagenome / Metatranscriptome160Y
F073442Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100019918F004235AGGAGGMATPQRTVTTLIGEDIRTIGKPITMIHLDWDVDADASREAMEAIINTVLSRGTILAAGAVYDTGTKQDYILEGNLTDTINNFTSLDGTVSGTLAQVLVEDIINLGTVDSVNFGSGTVACSIKSTLKFA
Ga0209535_100019921F073442AGGMQRNFILTDVMKTGDHSKLEQFINLHSLPEQTVDVTGEYYTLHTHDLDSYDRKFAVIDSNSLPKQDLLTSNKEFVPELKRRCDLLHSQGFVFIKANPWESLDNIKNTKQYPEFDIEHIKWTGGVSWFWFYMYQKHKDTKFNFDHSDKKYDFLYLNKMPRAHRLKLYNKLKNKGVLENSLHTKWPDRKLPAEYELPWAPDYPHYGMDQDIFEKPYNDTACSIVSETNDNDNDVFMTEKIWKPIIAQQIFVVHGNYLYLQKLREMGFKTYNNYFEEAYDIDRDPNLRIDTIVDVCDRLRDAPWQDLYLQSKALRQYNFNHFFNEEKLSLEINKTLNLFFEFADTRQVSS
Ga0209535_100019929F000464N/AMKLSQQQKIRMYSHHDRDLDIEDEFWPIMGILLAIIGVWTTIVHWIDWATLDVIPWWAEPFTITPVVFLLVMKERFDSINPLHWWPMFWGYQAKLPDEDRITIRPLDTERIMEQHGGRLNVYIIDYEHIKFRRKKDAVIFGLRYF
Ga0209535_100019937F041446N/AMNNVRIALKVVEDQIRNEHELINAITDDAPGTLEILIDEGPDLSVIKLFGKSFVESLHLLADNLGIDKKNIKITTFNLTQDLSVWPNIEIQHPTEYFTAADRFEVPLDKKIQKHFGVFVGTSRWHRLYIASMMHGLYKDKTMMSFWQHHLNGSMPANLRMDDVMLKDTDEPLRERMFDFVKQLPLHLDKEDVKINDNKGADITRGDWETPYEILPYYNRIFIDIVCETWHEGQCFLPNEKTGRPIIAKTPFIAYAGKGFLGNLKKIGFKTFDKWWSEGYDNHEGVKRIQYMLREIRTISNYPVDRLQEIHQEMMPTLQHNYETIKSLTPETMLEKLKS
Ga0209535_100019943F008154AGGAGMSKKKEDILLNDCYQEVFKVMIELQTRYNNQVIAGTMMAQALRLYKSNLTDEGFEAMVKVIADTGDSIQPFDAPSIN
Ga0209535_100019944F041486GGAMIISSIFGFILTVVGVNETAVAGYKIVTLGNNIQEKKEQKLLSASLHEEAQQILKDVIKETGK
Ga0209535_100019952F003326GGAGMATLKQKKKLIDTIRNPIRYFRLTFGRYGGEVAMGKISEEQYDYWSQKDQSEFEEYMVSVESDPDEANKDVPGNAQFDHPFYEYNDFCQVSGPEFANGQTLYIEELNKDGEPLDNGEGGYVEDIQHDFDDLTSLGVEIDNSEVYNSGSKACKDYYYVFGQYFNKGSWHTPDIIKTGSDGILMDKMKIYLTDADGFKAFSDVEYDGESYSLEEDSTGKSSSFYVGEGDDV
Ga0209535_100019953F000681AGGAGMYKRDQHYNEKLSKADLEKELSTHYTGETGLVINLMSYAIQDGIVETRHELSCANEELWSLNDWPEGEGFGSSDRFEYVRRITETVASERKFLQVEDELVQINKLDECPKNDTVRKYMIMNEEIRQGLTQGGK
Ga0209535_100019956F000724AGGAMSKKEKIWTMGNKGPTGPWVWHAWIKGSKKPLRVVAFDVDHIRCQLEGRQVIKAKRLPEEKNEFSSMPLGPKGCVVNQPADYDKGFKVLREWIDENGGPPEEIRKKLRELFIDYEKTTTYSQKKNGRHKI
Ga0209535_100019962F000896AGGAGMTNKINLVINLSILALLMYLAVSVKTLEDKVFPDPNIMQPAMGYDNSLEMKYNIQELLNNVIKDAINQQEND
Ga0209535_100019967F003357AGGAGGMTRNSWIVKQIYTDAKNNLGWLFKGILLAGGFIAGIKILMFFSVPKEILFPVMWIAFILVMLYKWYSMKYDWKNDDKAYDRASKRYMKKLKGGK
Ga0209535_100019969F025595AGGAGGMTVDINGLSTKLEVLTSIKENIQDGDTDTAIDMVNQMIELEPAPGQRRPVADALDHHQIMQKGIVR
Ga0209535_10001999F009991N/AMYYKSRIYQLNSLRLGLVHEDNIYGKPTIFLVMGSQSPDVDPHIKYYKELANKGNVNLVAIPFDNNGSEPGDDYEIVAHYENMLGIKFYVTEKIDASHQFFKDFGVPKNDFTEYHFDNETKFVRKA
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