NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000257

Scaffold Ga0209535_1000257


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000257 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36387
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (62.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020349Metagenome / Metatranscriptome224Y
F029403Metagenome188Y
F048929Metagenome147N
F049560Metagenome146N
F053229Metagenome / Metatranscriptome141Y
F093737Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100025725F093737GAGGMTDISKYKSIIVRVETHAKLKNLAGKDRKISGVVAQLVDKEWKKEHRKTV
Ga0209535_100025726F048929AGGAMLNDIKTKIVLAVQRQRMYDPVLKDTVDKVLVTFNDGNVSGYLADDWDSMLSQVDSMLEKAFLIEPNINRPQLD
Ga0209535_100025728F049560N/AMESGWQTLEDAIKITPPEVSSVGYVLKETKEYIILAADIGSDKMDNDVGRVTVIPGQWILEIKIIL
Ga0209535_100025733F053229GGAGMTEKVLDFKKPKKRRVIKDDSFVVRLPYPLTIHTLVDIVERMGIDHEGTVLPGLKFIERSIVKIEREE
Ga0209535_100025737F029403N/AMHPRQFKATISLKKAIIKFLEEGYYVFQNCSEQGPIDIIVVNPKNGKCFLFDVKTSRGTSTIVNGKSVGGTGNKLKDKQKELGVRLVVVEGEEVRIIETRKTILSRQKKQKRFLNKARKGIDFLEEH
Ga0209535_100025747F020349AGGMGKKRKEKKVNSWENIDQELVGSLTTEFKALHALYISQEVDPLAIASAFLAAGQWAMNKELGLKETQDLLHLLANYKYEVVPQNNRTIH
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