NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000377

Scaffold Ga0209535_1000377


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000377 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31326
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (69.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026128Metagenome / Metatranscriptome199Y
F039827Metagenome163Y
F056080Metagenome138N
F079330Metagenome116N
F090891Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100037711F090891AGGAMSDKVYLIKNGLTVLTDNPNKFLEDGWVHKHNNPEAKKPTGRKYGKKNKTPK
Ga0209535_100037731F026128N/AMEKKYKKVELPEFIRLSHYRITLEQIPSEISEECAEQQGSFHSRSMRIYLDQDIILQGGSIAVDLVKHELLHAIYYVRQLEGKGEEDVVNSMATHYTEIEKNNPDYVRWKLQNLN
Ga0209535_100037733F056080N/AMEYLKKEDRRNIKPKFIGTKEEKAKGQGKVVMINISESSLDILRSKKVVNIQQYYTALRVRRLWEKSRIGSYTSNFNKIGDITGWNDMATDRIDAIYKLSRLHTWLGDKSFGLVYNICVEDYTIKETATIHQVDRVYLGKRFREAIDEAQKFFDQTY
Ga0209535_100037753F079330N/AMKKIKVVLHHPANIFTLVESLLTITILNEVVAQYQVLDYYPTLERTINLERLIKDNKDNIYAEKVELDCFYEYREVKDSELLAKNFSTKSHELTIN
Ga0209535_100037762F039827N/AYTKTTHPHTFSGNVKIDTPSKAPSGYTKAEILGLFDLSHWDDMYNKKYTVWTADAVVETVESDFDVSTLS
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